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1 article(s) from Holden, Patricia A

Analysis of soil bacteria susceptibility to manufactured nanoparticles via data visualization

Rong Liu,
Yuan Ge,
Patricia A. Holden and
Yoram Cohen

Beilstein J. Nanotechnol. 2015, 6, 1635–1651, doi:10.3762/bjnano.6.166

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Figure 1: Workflow for visual data exploration of soil bacteria susceptible to MNP treatments.

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Figure 2: Bipartite graph for MNP-bacteria interrelationships at order level. Soil bacteria taxa identified f...

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Figure 3: Bipartite graph for bacterial taxon → MNP treatment at order level. Soil bacteria taxa identified f...

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Figure 4: Bipartite graph for MNP treatment → bacterial taxon at order level. Soil bacteria taxa identified f...

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Figure 5: Bipartite graphs for MNP-bacteria interrelationships at genus levels. At genus level, soil bacteria...

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Figure 6: Bipartite graphs for MNP-bacteria interrelationships at family levels. Soil bacteria taxa identifie...

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Figure 7: Bipartite graphs for MNP-bacteria interrelationships at (a). class, and (b). phylum levels. Soil ba...

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Figure 8: Contribution biplots generated by log-ratio analyses for taxonomic levels from OTU to phylum. The t...

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Figure 9: Contribution biplot for phylum level with Gemmatimonadetes removed. The treatments are labelled as ...

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Figure 10: Distance correlation between taxonomic levels from OTU to phylum using (a) log-ratio (LR) distance ...

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Figure 11: Clusters of treatments obtained via hierarchical clustering based on their L₁ distances calculated ...

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Figure 12: Nonmetric multidimensional scaling (NMDS) for OTU level (stress = 14.85%). The treatments are label...

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Figure 13: Simplified nonmetric multidimensional scaling (NMDS) for taxonomic levels from OTU to phylum. The g...

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Full Research Paper

Published 28 Jul 2015

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